User-defined search

P3Dscan allows to run a PDB-formatted protein structure against the dataset of phosphorylation site 3D zones collected in the phospho3D database. In order to limit the search to significant cases, only 3D matches with rmsd <= 0.5 Å and including at least four residue pairs are retained.

Here, you can submit your own structure:

Choose the set of three-dimensional phosphorylation sites you want to compare with your structure:

nr20 nr25 nr40 nr70 nr90 all

Your job may take up to a minute per protein chain, if you run P3Dscan on the whole dataset of zones (all).

September 2010